Disney Cupcake Encyclopedia

And now I present a complete list of the gourmet cupcakes available in the World (updated regularly). 

Please note that most of these are "seasonal" (read: either tied to a specific holiday or they just come and go from the menu) so they may not be available at any given time. Blame the Disney Gods.  Also they are generally listed in descending chronological order

Also, I will not be including Sprinkles cupcakes from Disney Springs because they are flavorless garbage and to call them cupcakes besmirches the good reputation of real cupcakes everywhere. 

At the Resorts

Polynesian

• Chocolate Beer Cupcake: Captain Cooks.
• Chocolate Macadamia Nut Cupcake: Captain Cooks.
• Easter Bunny Cupcake: Captain Cooks.
• Imagination Pink Cupcake: Captain Cooks.
• Lemon Ginger Cupcake: Captain Cooks.
• Mickey's Birthday Cupcake: Captain Cooks.
• Mickey's Haunted Chocolate Cupcake: Captain Cooks.
• Millennial Pink Cupcake: Captain Cooks.
• Minnie Mouse Cupcake: Captain Cooks.
• Moana Coconut Cupcake: Captain Cooks.
• Peanut Butter and Jelly Cupcake: Captain Cooks.
• Peppermint Cupcake: Captain Cooks.
• Pina Colada Cupcake: Captain Cooks.
• Purple Mickey Cupcake: Captain Cooks.
• Rocky Road Halloween Cupcake: Captain Cooks.
• Rose Gold Vanilla Cupcake: Captain Cooks.
• Tiramisu Cupcake: Captain Cooks.

• 4th of July Cupcake: Captain Cooks and Kona Cafe.
• Tropical Rose Gold Vanilla Cupcake: Captain Cooks and Kona Cafe.

• Christmas Tree Cupcake: Kona Cafe.

Contemporary

• Apple Cupcake: Contempo Cafe.
• Banana Caramel Cupcake: Contempo Cafe.
• Banana Flip Cupcake: Contempo Cafe.
• Birthday Cake Cupcake: Contempo Cafe.
• Black Forest Cupcake: Contempo Cafe.
• Candy Apple Cupcake: Contempo Cafe.  
• Candy Bar Cupcake: Contempo Cafe.  
• Carrot Cake Cupcake with White Chocolate Filling: Contempo Cafe.  
• Cherry Pie Cupcake: Contempo Cafe. 
• Cherry Cupcake with Pistachio Frosting: Contempo Cafe. 
• Chocolate Covered Coconut Cupcake: Contempo Cafe.
• Chocolate Peanut Butter Cupcake: Contempo Cafe.
• Chocolate Peppermint Cupcake: Contempo Cafe.
• Churro Cupcake: Contempo Cafe. 
• Cinderella Cupcake: Contempo Cafe.
• Coconut Cupcake with Chocolate and Banana Cream: Contempo Cafe.
• Cool Mint Cupcake: Contempo Cafe.
• Dulce de Leche Cupcake: Contempo Cafe.
• Earth Day Cupcake: Contempo Cafe.
• Firecracker Cupcake: Contempo Cafe.
• Firework Cupcake: Contempo Cafe.
• Frost Cupcake: Contempo Cafe.
• Hidden Mickey Cupcake: Holiday Display.
• Hot Chocolate Cupcake: Contempo Cafe.
• Imagination Pink Cupcake: Contempo Cafe.
• Iridescent Cupcake: Contempo Cafe.
• Mexican Coffee Cupcake: Contempo Cafe.
• Mickey's 90th Birthday Cupcake: Contempo Cafe.
• Millennial Pink Cupcake: Contempo Cafe.
• Minnie's Not-So-Scary Berry Cupcake: Contempo Cafe.
• Monorail Cookies and Cream Cupcake: Contempo Cafe.
• Orange Dream Cupcake: Contempo Cafe.
• Pineapple Rum Cream Cheese Cupcake: Contempo Cafe.
• Potion Purple Ears Cupcake: Contempo Cafe.
• Pumpkin Cupcake: Contempo Cafe.
• Pumpkin Spiced Cupcake: Contempo Cafe.
• Red Velvet/Cheesecake Cupcake: Contempo Cafe.
• Root Beer Float Cupcake: Contempo Cafe.
• Rose Gold Vanilla Cupcake: Contempo Cafe. 
• Spiced Apple Cupcake: Contempo Cafe.
• Star Wars Cupcake: Contempo Cafe.
• Strawberry Cupcake: Contempo Cafe.
• Strawberry Lemonade Cupcake: Contempo Cafe.
• Strawberry Shortcake Cupcake: Contempo Cafe. 
• Swirl Cone Cupcake: Contempo Cafe.
• Turtle Cupcake: Contempo Cafe.  
• Watermelon Cupcake: Contempo Cafe. 
• Worms in Dirt Cupcake: Contempo Cafe.

Grand Floridian

• Apple Cinnamon Wreath Cupcake: Gingerbread House.
• Blueberry Lemon Seasonal Cupcake: Gasparilla Grille.
• Carousel Cupcake: Gasparilla Grille.
• Cherry Berry Cupcake: Gasparilla Grille.
• German Chocolate Cupcake: Gasparilla Grille.
• Incredibles Dash Cupcake: Gasparilla Grille.
• Lemon Blueberry Cupcake: Gasparilla Grille.
• Mickey's 90th Birthday Cupcake: Gasparilla Grille.
• Minnie Mouse Cupcake: Gasparilla Grille.
• Mocha Cupcake: Gasparilla Grille.
• Pina Colada Cupcake: Gasparilla Grille.
• Pumpkin Patch/Harvest Pumpkin Cupcake: Gasparilla Grille.
• Rose Gold Unicorn Cupcake: Gasparilla Grille.
• Smores Cupcake: Gasparilla Grille.
• Spring Seasonal (floral) Cupcake: Gasparilla Grille.

Wilderness Lodge

• 4th of July Cherry Pie Cupcake: Roaring Fork.
• Apple Cinnamon Cupcake: Roaring Fork.
• Campfire Cupcake: Roaring Fork.
• Candy Cupcake: Roaring Fork.
• Caramel Cupcake: Roaring Fork.
• Carrot Cake Cupcake: Roaring Fork.
• Chocolate Caramel Cupcake: Roaring Fork.
• Chocolate Chip Peppermint Cupcake: Roaring Fork.
• Chocolate Peppermint Cupcake: Roaring Fork.
• Cinnamon Roll Cupcake: Roaring Fork.
• Earth Day Cupcake:  Roaring Fork.
• Easter Cupcake:  Roaring Fork.
• Eggnog Cupcake:  Roaring Fork.
• Gingerbread Squirrel Cupcake: Roaring Fork.
• Going Batty Cupcake: Roaring Fork.
• Oktoberfest Cupcake: Roaring Fork.
• PB and J Back to School Cupcake: Roaring Fork.
• Poison Apple Cupcake: Roaring Fork.
• Pumpkin Cupcake: Roaring Fork.
• Strawberry Lemonade Cupcake: Roaring Fork.
• Smores Cupcake: Roaring Fork.

• Candy Corn Cupcake: Trail's End To Go Chuckwagon, Fort Wilderness.

Boardwalk

• Candy Corn Cupcake: Boardwalk Bakery.
• Coconut Cream Cupcake: Boardwalk Bakery.
• Coconut Lime Passionfruit Cupcake: Boardwalk Bakery.
• Coffee Mocha (Redundant?) Cupcake: Boardwalk Bakery.
• Dulce de Leche Cupcake: Boardwalk Bakery.
• Father's Day Cupcake: Boardwalk Bakery.
• Happy New Year Cupcake: Boardwalk Bakery.
• Hot Cocoa Cinnamon Seasonal Cupcake: Boardwalk Bakery.
• Lemon Blueberry Cupcake: Boardwalk Bakery.
• Mermaid Cupcake: Boardwalk Bakery.
• Mickey Oreo Cupcake: Boardwalk Bakery.
• Mother's Day Hydrangea Cupcake: Boardwalk Bakery.
• Orange Dream Cupcake: Boardwalk Bakery.
• Oreo Bon Bon Cupcake: Boardwalk Bakery.
• Peanut Butter Cupcake: Boardwalk Bakery.
• Peppermint Cupcake: Boardwalk Bakery.
• Pumpkin Spice Fall Specialty Cupcake: Boardwalk Bakery, Screendoor.
• Purple/Pink Minnie Cupcake: Boardwalk Bakery.
• Rainbow Cupcake: Boardwalk Bakery.
• Raspberry Rose Cupcake: Boardwalk Bakery.
• Red (velvet), White and Blue Cupcake: Boardwalk Bakery.
• Rose Gold Yellow Cupcake: Boardwalk Bakery.
• Smores Cupcake: Boardwalk Bakery.
• Spring Basket/Meadow Cupcake: Boardwalk Bakery.
• Strawberry Frosted Cupcake: Boardwalk Bakery.
• Strawberry Shortcake Cupcake: Boardwalk Bakery.
• St. Patrick's Day Cupcake: Boardwalk Bakery.
• Unicorn Cupcake: Boardwalk Bakery.

Yacht and Beach Club

• Caramel Candy Apple Cupcake: Marketplace and The Market.
• Earth Day Cupcake: Marketplace and The Market.
• Gingerbread Cupcake: Marketplace.
• Goofy Chocolate and Peanut Butter Cupcake: Marketplace.
• Pumpkin Cupcake: Marketplace and The Market.
• Strawberry-Chocolate Mousse Cupcake: Marketplace and The Market.
• Witch's Brew Cupcake: Marketplace.

Animal Kingdom Lodge

• African Sunshine Cupcake: The Mara.
• African Violet Cupcake: The Mara.
• Chocolate Candy Corn Cupcake: The Mara.
• Giraffe Cupcake: The Mara.
• Hidden Treasures Cupcake: The Mara.
• Iridescent Rhino Cupcake: The Mara.
• Mickey's Santa Cupcake: The Mara.
• Minnie's Cherry Cordial Cupcake: The Mara.
• Minnie's Rock the Dots Cupcake: The Mara.
• Millennial Pink Raspberry Chocolate Cupcake: The Mara.
• Vanilla Peppermint Cupcake: The Mara.
• Witch's Finger Cupcake: The Mara.
• Zebra Cupcake: The Mara.

Caribbean Beach

• Arendelle Aqua Sparkle Cupcake: Centertown Market.
• Briar Rose Gold Cupcake: Centertown Market.
• Easter Egg Cupcake: Centertown Market.
• Imagination Pink Cupcake: Centertown Market.
• Monkey Cupcake (both chocolate and vanilla flavors): Old Port Royale Food Court.
• Rose Gold Unicorn Cupcake: Centertown Market.
• Underwater Princess Cupcake: Centertown Market.

Port Orleans

• Bo Peep Cupcake: Riverside Mill Food Court.
• Briar Rose Gold Cupcake: Riverside Mill Food Court and Sassagoula Floatworks and Food Factory. 
• Chocolate Stout Cupcake: Riverside Mill Food Court and Sassagoula Floatworks and Food Factory.
• Cotton Candy Cupcake: Riverside Mill Food Court.
• Easter Egg Cupcake: Riverside Mill Food Court and Sassagoula Floatworks and Food Factory. 
• Hazelnut Cookies and Cream Cupcake: Riverside Mill Food Court.
• Imagination Pink Cupcake: Sassagoula Floatworks and Food Factory. 
• Mardi Gras Cupcake: Sassagoula Floatworks and Food Factory.
• Pumpkin Cheesecake Cupcake: Riverside Mill Food Court and Sassagoula Floatworks and Food Factory. 
• Rainbow Pride Cupcake: Sassagoula Floatworks and Food Factory.
• Red Velvet Cupcake: Riverside Mill Food Court.

Pop Century

• 4th of July Firecracker Cupcake: Everything Pop.
• Arendelle Aqua Pearl Cupcake: Everything Pop.
• Banana Split Cupcake: Everything Pop.
• Bo Peep Cupcake: Everything Pop.
• Briar Rose Gold Cupcake: Everything Pop.
• Bubble, Bubble, Toil, and Trouble Cupcake: Everything Pop.
• Candy Hearts Cupcake: Everything Pop.
• Caramel Apple Monster Cupcake: Everything Pop.
• Chewbacca Chocolate Hazelnut Cupcake: Everything Pop.
• Cookies and Cream Mickey Cupcake: Everything Pop.
• Frozen 2 Wave Cupcake: Everything Pop.
• Funfetti/Birthday Sundae Cupcake: Everything Pop.
• Hot Pink Cupcake: Everything Pop.
• Millennial Pink Headband Cupcake: Everything Pop.
• Mother's Day Strawberry Lemon Cupcake: Everything Pop.
• Peanut Butter Paws Cupcake: Everything Pop.
• Shark Cupcake: Everything Pop.
• The King (Elvis) Cupcake: Everything Pop.
• Watermelon Cupcake: Everything Pop.

Art of Animation

• Briar Rose Gold Cupcake: Landscape of Flavors.
• Confetti Cupcake: Landscape of Flavors.
• Funfetti Sundae Cupcake: Landscape of Flavors.
• "Macaroon" Cupcake: Landscape of Flavors.
• Mermaid Tail Cupcake: Landscape of Flavors.
• Mickey Mouse Cupcake: Landscape of Flavors.
• Mickey Vanilla Oreo Cupcake: Landscape of Flavors.
• Millennial Pink Raspberry Cupcake: Landscape of Flavors.
• Peanut Butter Paws Cupcake: Landscape of Flavors.
• Pink Rose Cupcake: Landscape of Flavors.
• Potion Purple Galaxy Cupcake: Landscape of Flavors.
• Pumpkin Cupcake: Landscape of Flavors.

All Star Music

• 4th of July Apple Cinnamon Cupcake: Intermission Food Court.
• Banana Split/Ice Cream Sundae Cupcake: Intermission Food Court.
• Cookies and Cream Mickey Cupcake: Intermission Food Court.
• Dole Whip Cupcake: Intermission Food Court.
• Hades Cupcake: Intermission Food Court.
• Genie Magic Lamp Cupcake: Intermission Food Court.
• Maleficent Cupcake: Intermission Food Court.
• Minnie Pink Velvet Cupcake: Intermission Food Court.
• Moana Cupcake: Intermission Food Court.
• Orange Dream Cupcake: Intermission Food Court.
• Peaches and Cream Cupcake: Intermission Food Court.
• Peanut Butter and Chocolate Cupcake: Intermission Food Court.
• PB and J Cupcake: Intermission Food Court.
• Pineapple Swirl Cupcake: Intermission Food Court.
• Princess Aurora Cotton Candy Cupcake: Intermission Food Court.
• Rapunzel Cupcake: Intermission Food Court.
• Stitch Cupcake: Intermission Food Court.
• Tinkerbell Cupcake: Intermission Food Court.
• Unicorn Cupcake: Intermission Food Court.
• Ursula Cupcake: Intermission Food Court.

All Star Movies

• 101 Dalmatians Cupcake: World Premiere Food Court.
• Easter Bunny Cupcake: World Premiere Food Court.
• Forky/Luxo Ball Cupcake: World Premiere Food Court.
• Herbie the Lovebug Cupcake: World Premiere Food Court.
• Mike Wazowski Cupcake: World Premiere Food Court.
• Peaches and Cream Cupcake: World Premiere Food Court.
• Sorcerer Mickey Cupcake: World Premiere Food Court.
• Sulley Cupcake: World Premiere Food Court.

All Star Sports

• Cheer Cupcake: End Zone Food Court.
• Frozen Fractals Cupcake: End Zone Food Court.
• Hot Chocolate Cupcake: End Zone Food Court.
• Minnie Pink Velvet Cupcake: End Zone Food Court.
• Surfing Stitch Cupcake: End Zone Food Court.

Saratoga Springs

• Aladdin Cupcake: Artist's Palette.
• Briar Rose Gold Cupcake: Artist's Palette.
• Chocolate Mint Father's Day Golf Cupcake: Artist's Palette.
• Genie's Magical Lamp Cupcake: Artist's Palette.
• Hidden Truth Frozen II Cupcake: Artist's Palette.
• Little Mermaid Cupcake: Artist's Palette.
• Maleficent Cupcake: Artist's Palette.
• Milk and Cookies Cupcake: Artist's Palette.
• Orange Bird Cupcake: Artist's Palette.
• Oreo Hazelnut Cupcake: Artist's Palette.
• Peanut Butter Bullseye Cupcake: Artist's Palette.

Coronado Springs

• Easter Cupcake: Cafe Rix, Coronado Springs. 
• Mocha Cupcake: Cafe Rix, Coronado Springs. 

Multiple/Other Resorts

• Banana Split Cupcake: Some All Star food courts.
• Briar Rose Gold Cupcake: Some All Star food courts.
• Chai Tea Cupcake: Some All Star food courts.
• Chef's Special Cupcake: Some All Star food courts. 
• Cheshire Cat Cupcake: Some All Star food courts. 
• Chocolate Mickey Pumpkin Cupcake: Some All Star food courts.
• Cookies and Cream Spiderweb Cupcake: Some All Star food courts. 
• Day of the Dead Cupcake: Some All Star food courts. 
• Jack's Hallo-lime Cupcake: Some All Star food courts.
• Maple Bacon Father's Day Cupcake: Some All Star food courts.
• Merida Cupcake: Some All Star food courts.
• Mickey Dreamsicle Cupcake: Some All Star food courts.
• Pineapple/Dole Whip Cupcake: Some All Star food courts.
• Potion Purple Galaxy Cupcake: Some All Star food courts.
• Rainbow Unicorn Cupcake: Some All Star food courts. 
• Spider Cupcake: All All Star food courts. 
• Stitch Cupcake: Some All Star food courts.
• Thanksgiving Cupcake: Some All Star food courts.

• Iridescent Cupcake: All All Star food courts; The Artist’s Palette, Saratoga Springs.
• Gingerbread Cupcake: Good’s Food to Go, Old Key West; The Artist’s Palette, Saratoga Springs.
• Smores Cupcake: Good’s Food to Go, Old Key West; The Artist’s Palette, Saratoga Springs.
• Water Spirit Cupcake: Centertown Market, Caribbean Beach Resort, Riverside Mill Food Court and Sassagoula Floatworks and Food Factory, Port Orleans.

• Little Mermaid Cupcake: Good’s Food to Go, Old Key West

• Not So Short Strawberry Cupcake: Fuel; The Dolphin.

Magic Kingdom

Triple Chocolate

Strawberry Cream Cheese

• The Grey Stuff/Master's Cupcake: Be Our Guest Restaurant, Fantasyland. 
• The Triple Chocolate Cupcake: Be Our Guest Restaurant, Fantasyland. 
• The Strawberry Cream Cheese Cupcake: Be Our Guest Restaurant, Fantasyland. 
• The Lemon Meringue Cupcake: Be Our Guest Restaurant, Fantasyland. 

• Amuck (Trick or Treat Candy) Cupcake: Main Street Bakery/Starbucks, Main Street.
• Castle Cupcake: Main Street Bakery/Starbucks, Main Street.
• Donald Duck Vanilla Cupcake: Main Street Bakery/Starbucks, Main Street.
• Flower Crown Cupcake: Main Street Bakery/Starbucks, Main Street.
• Ice Cream Sundae Cupcake: Main Street Bakery/Starbucks, Main Street.
• Mary Poppins Spoonful of Sugar Cupcake: Main Street Bakery/Starbucks, Main Street.
• Mermaid Cupcake: Main Street Bakery/Starbucks, Main Street.
• Mickey Mouse Chocolate Cupcake: Main Street Bakery/Starbucks, Main Street.
• Mocha Cupcake: Main Street Bakery/Starbucks, Main Street.
• Mousketeer Cupcake: Main Street Bakery/Starbucks, Main Street.
• Not So Poisoned Apple Cupcake: Main Street Bakery/Starbucks, Main Street. 
• Peanut Butter Cupcake: Main Street Bakery/Starbucks, Main Street. 
• Rainbow Unicorn Cupcake: Main Street Bakery/Starbucks, Main Street.
• Red Velvet Cupcake: Main Street Bakery/Starbucks, Main Street.
• Rose Gold Mickey Ears Cupcake: Main Street Bakery/Starbucks, Main Street.
• Wreck It Ralph Sugar Rush Cupcake: Main Street Bakery/Starbucks, Main Street.

• Briar Rose Gold Cupcake: Main Street Confectionary, Main Street.
• Swirl Iced/Tie Dye Cupcake: Main Street Confectionary, Main Street.

• Under the Sea Chocolate/Vanilla Cupcake: Prince Eric's Village Market, Fantasyland.

• Dumbo Cupcakes (vanilla and chocolate/peanut butter): Big Top Treats, Fantasyland.
• Mickey's Birthday Cupcake: Big Top Treats, Fantasyland.  

• Belle Vanilla Cupcake: Main Street Bakery/Starbucks, Main Street; Big Top Treats, Fantasyland. 
• Holiday Cupcake: Main Street Confectionary, Main Street; Big Top Treats, Fantasyland. 
• Pumpkin (but really just vanilla) Cupcake: Main Street Confectionary, Main Street; Big Top Treats, Fantasyland.

• Limited Time Ghost-A-Host Cupcake: Ice Cream Cart by the Haunted Mansion, Liberty Square.

Hollywood Studios

RIP Starring Rolls :(

• Butterfinger Cupcake: Starring Rolls.  The king of all Disney cupcakes. (see also the Chocolate Toffee Cupcake and the Chocolate Peanut Butter Crunch Cupcake below)

• Red Velvet Cheesecake Cupcake: Starring Rolls.

• Chocolate Cherry Cupcake: Starring Rolls.

• Marble Cupcake: Starring Rolls.
• 
• Carrot Cake Cupcake: Starring Rolls.
• Pumpkin Cupcake with Maple Frosting: Starring Rolls. 

• A Wrinkle In Time Cupcake: Trolley Car Cafe.
• Boston Cream Pie Cupcake: Trolley Car Cafe.
• Cinderella Cupcake (vanilla): Trolley Car Cafe.
• Chocolate Peanut Butter Crunch Cupcake: Trolley Car Cafe.
• Chocolate Toffee Cupcake (looks like the Butterfinger cupcake): Trolley Car Cafe.
• Jack Skellington Carrot Cake Cupcake: Trolley Car Cafe.
• Lady and the Tramp Cupcake (red velvet/dark chocolate): Trolley Car Cafe.
• Prep and Landing Holiday Cupcake: Trolley Car Cafe.
• Solo: A Star Wars Story Cupcake: Trolley Car Cafe.
• Tale as Old as Time Cupcake: Trolley Car Cafe.
• Vanilla Cupcake with Strawberry Frosting: Trolley Car Cafe.
• White Chocolate Raspberry Beauty and the Beast Cupcake: Trolley Car Cafe.

• Chocolate Cappucino Cupcake: Pizza Planet.
• Lemon Meringue Cupcake: ABC Commissary.
• "Spaghetti and Meatball" Cupcake: Mama Melrose's.

• Baby Groot Cookies ‘n Cream Cupcake: Trolley Car Cafe, ABC Commissary, Backlot Express, Studio Catering Co., and Rosie's All American Cafe.
• BB8, BB9e, Kylo Ren and Darth Vader Cupcakes: Backlot Express, Dockside Diner, and Rosie's All American Cafe.
• Big Hero 6 Chocolate Cupcake with Banana Buttercream Icing and Caramel Drizzle: ABC Commissary,  Backlot Express, Studio Catering Co., Rosie's All American Cafe. 
• Blueberry Cupcake with Lemon Cream Cheese Frosting: Fairfax Fare, ABC Commissary, Backlot Express.
• Blueberry and Vanilla Finding Dory Cupcake: ABC Commissary, Rosie's All-American Cafe, Backlot Express, Studio Catering Co., Fairfax Fare. 
• Caramel Apple Cupcake: Various locations.
• Dulce de Leche Coco Cupcake: Trolley Car Cafe, other counter locations (seasonal).
• Gingerbread Cupcake with Cream Cheese Frosting: ABC Commissary, Rosie's All-American Cafe, Backlot Express, Studio Catering Co., Fairfax Fare. 
• Incredible Red Velvet Cupcake: Trolley Car Cafe, Rosie's All American Cafe, Catalina Eddy's.
• Pirate's Treasure Cupcake: ABC Commissary, Backlot Express, Studio Catering Co.
• Pride Rainbow Popcorn Cupcake: Trolley Car Cafe, Rosie's All-American Cafe.
• Raspberry Cupcake with White Chocolate Raspberry Frosting: Trolley Car Cafe, Rosie's All-American Cafe, Fairfax Fare. 
• Red Velvet Cupcake: Trolley Car Cafe.
• Springtime Cupcake: Trolley Car Cafe, ABC Commissary, Fairfax Fare, Rosie's All American Cafe.
• Strawberry and Cream Cupcake: Rosie's All-American Cafe, Backlot Express.
• Toy Story Cupcake: various locations.
• Toy Story Land Opening Celebration Cupcake:Trolley Car Cafe, Catalina Eddy's, Fairfax Fare, and Rosie's All American Cafe.
• White Chocolate Raspberry Easter Cupcake: ABC Commissary, Studio Catering Co.

Animal Kingdom 

• Bird Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Cottontop Tamarin Cupcake: Kusafiri Bakery, Africa; Isle of Java, Discovery Island; Creature Comforts, Discovery Island.
• Earth Day Cupcake: Creature Comforts, Discovery Island; Pizzafari, Discovery Island; Restaurantosaurus, Dinoland, USA.
• Easter Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Elephant Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Father's Day Nemo Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Flamingo Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Halloween Cupcake: Creature Comforts, Discovery Island; Pizzafari, Discovery Island; Restaurantosaurus, Dinoland, USA.
• Lotus Blossom Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Mickey Christmas Tree Cupcake: Creature Comforts, Discovery Island; Pizzafari, Discovery Island; Restaurantosaurus, Dinoland, USA.
• Mother's Day Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Rafiki Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Simba/Lion Cub Cupcake: Kusafiri Bakery, Africa; Creature Comforts, Discovery Island; Isle of Java, Discovery Island; Pizzafari, Discovery Island.
• Thanksgiving Turkey Cupcake: various locations in the park.
• Tiger Cupcake: Creature Comforts, Discovery Island; Restaurantosaurus, Dinoland USA.
• Tree of Life Cupcake: Creature Comforts, Discovery Island; Flame Tree BBQ, Discovery Island.
• Zebra Cupcake: Kusafiri Bakery, Africa; Creature Comforts, Discovery Island.

• 4th of July Apple Pie Cupcake: Restaurantosaurus, Dinoland USA.
• Bugs 'n' Grub Cupcake: Restaurantosaurus, Dinoland USA.
• Christmas Tree Cupcake: Restaurantosaurus, Dinoland USA.
• Halloween Chocolate Cupcake: Restaurantosaurus, Dinoland USA.

• Firefly Cupcake: Creature Comforts, Discovery Island.
• Mocha Caramel Cupcake: Creature Comforts, Discovery Island.
• Rivers of Light Specialty Lotus Flower Cupcake: Creature Comforts, Discovery Island.
• Polar Bear Cupcake: Creature Comforts, Discovery Island.
• Vanilla-Key Lime-Coconut Cupcake: Creature Comforts, Discovery Island.

• Donald's Dino-Bash Cupcake: Dino Diner, Dinoland, USA.

• It's a Girl Cupcake: Tamu Tamu Refreshments, Africa.

• Salted Caramel Apple Crisp Cupcake: Flame Tree BBQ, Discovery Island.

• Kevin Cupcake: Warung Outpost, Asia.

• Tye Dye Cupcake: Kusafiri Bakery, Africa.
• White Chocolate Elephant Cupcake: Kusafiri Bakery, Africa.

• 10th Anniversary Avatar Cupcake: Pongu Pongu, Pandora.

Epcot

• Guava Cream Cheese Cupcake: Sunshine Seasons, Land Pavilion.

• Apple Spice Cupcake: Sunshine Seasons, Land Pavilion.
• Arendelle Aqua Pearl Cupcake: Sunshine Seasons, Land Pavilion.
• Belle's Gown Cupcake: Sunshine Seasons, Land Pavilion.
• Black Forest Cupcake: Sunshine Seasons, Land Pavilion.
• Butterfly Cupcake: Sunshine Seasons, Land Pavilion.
• Candy Apple Cupcake: Sunshine Seasons, Land Pavilion.
• Caramel Apple Cupcake: Sunshine Seasons, Land Pavilion.
• Carrot Cake Cupcake: Sunshine Seasons, Land Pavilion.
• Caterpillar Cupcake: Sunshine Seasons, Land Pavilion.
• Chocolate Raspberry Cupcake: Sunshine Seasons, Land Pavilion.
• Earl Grey Honeybee Cupcake: Sunshine Seasons, Land Pavilion.
• German Chocolate Father's Day Beer Mug Cupcake: Sunshine Seasons, Land Pavilion.
• Holiday Minnie Cupcake: Sunshine Seasons, Land Pavilion.
• Holiday Presents Cupcake: Sunshine Seasons, Land Pavilion.
• Lemon Blast Cupcake: Sunshine Seasons, Land Pavilion.
• Monsters, Inc. Cupcake: Sunshine Seasons, Land Pavilion.
• Orange Soarin' Cupcake: Sunshine Seasons, Land Pavilion.
• PB and J Flower Pot Cupcake: Sunshine Seasons, Land Pavilion.
• PB and J Winter Cupcake: Sunshine Seasons, Land Pavilion.
• Pineapple Coconut Cupcake: Sunshine Seasons, Land Pavilion.
• Rose Gold Mickey Ears Cupcake: Sunshine Seasons, Land Pavilion.
• Seasons Greetings Holiday Cinnamon Vanilla Cupcake: Sunshine Seasons,Land Pavilion.
• Thanksgiving Turkey Cupcake: Sunshine Seasons,Land Pavilion.
• Ursula Cupcake: Sunshine Seasons, Land Pavilion.
• Vegan Coconut Pineapple Cupcake: Sunshine Seasons, Land Pavilion.

• Karamel Vanilla Cupcake: Karamel Kuche, Germany Pavilion.

• Caramel Corn Cupcake: Karamel Kuche, Germany Pavilion.
• Karamel Chocolat Cupcake: Karamel Kuche, Germany Pavilion. 
• Pumpkin Caramel Cupcake: Karamel Kuche, Germany Pavilion.
• Salted Caramel Cupcake: Karamel Kuche, Germany Pavilion.

• Four Mini Frozen 2 Cupcakes: Kringla Og Bakeri, Norway Pavilion.

• 4th of July Cupcake: Fountainview Starbucks, Future World.
• Banana Cream Pie Cupcake: Fountainview Starbucks, Future World.
• Boston Cream Pie Cupcake: Fountainview Starbucks, Future World.
• Caramel Apple Pie Cupcake: Fountainview Starbucks, Future World.
• Chocolate Cappucino Cupcake: Fountainview Starbucks, Future World.
• Halloween Cupcake: Fountainview Starbucks, Future World.
• Mickey Cupcake: Fountainview Starbucks, Future World.
• Millennial Pink Cupcake: Fountainview Starbucks, Future World.
• Spaceship Earth Cupcake: Fountainview Starbucks, Future World.
• Strawberries and Cream Cupcake: Fountainview Starbucks, Future World.

• IS NOT A REAL CUPCAKE BUT WHATEVER: Cannolli Cupcake: Gelato Stand, Italy Pavilion, World Showcase.

• Marshmallow Cookie Crunch Cupcake: Liberty Inn, American Adventure Pavilion.

• Easter Bunny Cupcake: Fountainview Starbucks, Future World; Sunshine Seasons, Land Pavilion.

Honorable Mentions

• Cupcakes in Disney Springs
• The Pink, Blue, and White Cupcakes, everywhere.
• Free birthday cupcakes. :)
• Special event and one-day-only cupcakes like those available during Star Wars Weekends, International Women's Day, etc.
• Regular vanilla and chocolate cupcakes, everywhere (including ones that come in seasonal holiday shapes and decorations).
• Cake cups, Cheshire Cat Cafe, Magic Kingdom (R.I.P.)
• "Muffins" 
• Frozen-themed cupcakes available at Wandering Oaken's Trading Post (now closed).
• Anna: Chocolate cake/buttercream frosting
• Elsa: Vanilla cake/buttercream frosting
• Olaf: Carrot cake/cream cheese frosting --> chocolate cake/marshmallow frosting now at ABC Commissary.